PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00124806001 | ||||||||
Common Name | GSBRNA2T00124806001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 374aa MW: 40267.5 Da PI: 4.8419 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.7 | 6.9e-15 | 219 | 271 | 4 | 56 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +kr+rr+ +NRe+ArrsR+RK++++ L v +L +e ++ k+l+e +++ GSBRNA2T00124806001 219 VKRARRMLSNRESARRSRRRKQEQMSGLDSQVGQLRGEHATMLKRLSEVTQKF 271 79********************************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-15 | 216 | 280 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.208 | 218 | 270 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.7E-13 | 219 | 271 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.45E-10 | 219 | 270 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.3E-11 | 220 | 270 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 223 | 238 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.4E-9 | 287 | 346 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MKSGFSADDP TDSFWLPPPP PSPPQSPGEG MTRSQSEWAF QMLLEEISSV PAGSSISSSS 60 ATDNAIGRSY PPQVRSESSV SRTEEASSNV VVMQKPSRNG ATSSFVEEID PNHYQAVLKS 120 KLELACAAVA LRVSTVTPEG SSASSGIQNQ VSPVGSQTQG SAVAQMSPAV SSVSDAPSFD 180 TQRQRDIQSR LAASDSDDSD DEDPDGETVT TVNADPTNVK RARRMLSNRE SARRSRRRKQ 240 EQMSGLDSQV GQLRGEHATM LKRLSEVTQK FSTAVVDNRI LKADIETLRT KVKMAEDTVK 300 RVTGMNPRLL AKPYSIPFDR TLMGTSQPNL NQTDMIPNQI SENDSFASNS VVSLEAGCNA 360 FEATSWICDK EAP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 239 | RRSRRRKQ |
2 | 234 | 239 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2856 | 1e-169 | seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00124806001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013734641.1 | 0.0 | basic leucine zipper 25-like isoform X3 | ||||
Swissprot | Q9M1G6 | 1e-75 | BZP25_ARATH; Basic leucine zipper 25 | ||||
TrEMBL | A0A078F3N8 | 0.0 | A0A078F3N8_BRANA; BnaA03g18190D protein | ||||
STRING | Bra000102.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20257 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 6e-68 | basic leucine zipper 25 |
Publications ? help Back to Top | |||
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