PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00123600001

Common Name

GSBRNA2T00123600001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 194aa MW: 21015.8 Da PI: 7.9172

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00123600001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.8	4.4e-39	11	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++C++apyf ae+ +++fa+vhk+FGasn +kll +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+q+++ GSBRNA2T00123600001 11 PCGACKFLRRKCVAECIFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQHQVMS 100 7*******************999879********************************************************** PP DUF260 90 lkaelallkee 100 l++ela++k++ GSBRNA2T00123600001 101 LQEELAVVKTH 111 ****99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.848	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-38	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSGSTPSGGS PCGACKFLRR KCVAECIFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI 60 PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQVMS LQEELAVVKT HLTTLERLPP 120 QPKQQNNSQT EAASSTKAPL IATADHKKNN VSSSLLHIYG MSQEQQQQQP QEGTEVPNES 180 YLTDGKYRSS SPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-39	4	112	4	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-39	4	112	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00123600001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111506.1	1e-137	PREDICTED: LOB domain-containing protein 31
Refseq	XP_013731248.1	1e-137	LOB domain-containing protein 31
Swissprot	O81322	3e-86	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A078JPX1	1e-135	A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBL	A0A291LR22	1e-135	A0A291LR22_BRARR; Transcription factor LBD31
TrEMBL	A0A3P5XT75	1e-135	A0A3P5XT75_BRACM; Uncharacterized protein
TrEMBL	M4F8B0	1e-135	M4F8B0_BRARP; Uncharacterized protein
STRING	Bra037322.1-P	1e-136	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	3e-78	LOB domain-containing protein 31

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]