PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00123181001 | ||||||||
Common Name | GSBRNA2T00123181001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 621aa MW: 67949.7 Da PI: 5.3816 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.2e-08 | 242 | 262 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C FaHg GSBRNA2T00123181001 242 PCPDFRK-GACRRGDMCEFAHG 262 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 6.84E-15 | 29 | 156 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.36E-14 | 37 | 150 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.1E-15 | 39 | 157 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-10 | 75 | 146 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.502 | 79 | 147 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.02 | 79 | 107 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.9E-5 | 80 | 95 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.636 | 112 | 147 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0054 | 112 | 144 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.9E-5 | 131 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.7E-6 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 242 | 264 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 242 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 242 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 43 | 272 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.906 | 272 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MCCGSDQLNQ ISSPEDTTTN TEMNHLRVET EDTFASLLEL AANNDVEGVR LSIDRDPSCV 60 DEPGLWYGRQ KGSKAMVNDH RTPLMVAATY GSIDVIKLIL SLTDVNRACG SDQTTALHCA 120 ASGGAVNAVQ VVKLLLAAGA DLNLMDADGQ RAGDVIVYGD GDGESPFKMK SSTEFKKEYP 180 VDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 240 VPCPDFRKGA CRRGDMCEFA HGVFECWLHP AQYRTRLCKD GTGCARRVCF FAHIPEELRP 300 LYESTGSAVL SPRSNADFAA ALSLLPPGSP SGVSVMSPLS PSSGGNGMSS MAWPQPNVPA 360 LQLPGSNLRS SRLRSSFNAR DEMNMLAEYE QQQLLNEFNS SLSRSGRMKS LPPSNLEDLF 420 SAESSSSPRF NDSALASAVF SPTHKSAVFN QFQQQQQQQS MMSPRNVVEP ISPMSSRVSM 480 LAQCQQQQQN QFRSLRSREQ LRTSSSPVVG SPVNNNNNNN NAWSSQWGSS NGKPDWGMSS 540 EAAALGKLSF DGGVEPDVSW VQSLVKENST EAKENAAATS SNTGQNTMQQ PTTSEMVMDH 600 AGLEAWIEQM QLDQFVAQQN * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5155 | 0.0 | flower| leaf| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00123181001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189568 | 0.0 | AC189568.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142026.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30 | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A3P6D5L8 | 0.0 | A0A3P6D5L8_BRACM; Uncharacterized protein | ||||
STRING | Bra016903.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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