PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121914001

Common Name

GSBRNA2T00121914001, LOC106364970, LOC106365019

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 254aa MW: 28276.7 Da PI: 8.9714

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121914001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H GSBRNA2T00121914001 92 FECHYCFRNFPTSQALGGHQNAH 114 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.41E-6	88	119	No hit	No description
Pfam	PF13912	2.0E-5	91	116	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.99	92	119	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDERNAERET KDFMNVESFS QLPFFRRPPS KDKNPKPVRL FGKDFTTGEY SGTTSQQDHS 60 ETKHKEDEEV AEDDQTGDNG KDNSRSNNNR RFECHYCFRN FPTSQALGGH QNAHKRERQL 120 AKRGASSYFH HPDANLYGYR HYPSWSSTSL PAARFYGGNI PGSGPSSSFH TRPINGSPLG 180 LWRSSSSFRG VYNPNAAFTS HVSSDNSILS SLAGSQPHPP LQVGGSAAQN RMSSYRYGLS 240 PNVQDHVSLD LNL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13545	1e-33	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence meristems, floral meristems and stem epidermis. {ECO:0000269\|PubMed:16679458}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA) (PubMed:16679458, PubMed:17507408). Mediates the induction of GL1 expression by GA in inflorescence organs and is antagonized in its action by the DELLA repressor GAI. Acts upstream of the trichome initiation regulators GL1 and GL3, and downstream of the GA signaling repressor SPINDLY (SPY) (PubMed:16679458). Does not play a significant role in the cytokinin response (PubMed:17507408). Controls trichome branching through GA signaling (PubMed:22210898, PubMed:23825141). Acts downstream of the key regulator STICHEL (STI) in an endoreduplication-independent pathway (PubMed:22210898). Controls trichome cell division indirectly by acting downstream of a key endoreduplication regulator SIAMESE (SIM) (PubMed:23825141). {ECO:0000269\|PubMed:16679458, ECO:0000269\|PubMed:17507408, ECO:0000269\|PubMed:22210898, ECO:0000269\|PubMed:23825141}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121914001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. {ECO:0000269\|PubMed:16679458}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116503.1	0.0	PREDICTED: zinc finger protein GIS
Refseq	XP_013659894.1	0.0	zinc finger protein GIS-like
Swissprot	Q84WI0	1e-106	GIS_ARATH; Zinc finger protein GIS
TrEMBL	A0A397Y2E0	0.0	A0A397Y2E0_BRACM; Uncharacterized protein
TrEMBL	M4CT36	0.0	M4CT36_BRARP; Uncharacterized protein
STRING	Bra007378.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2495	19	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	106364970 \| 106365019

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859] Yu D, et al. RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis. Plant Physiol. Biochem., 2015. 88: p. 82-8 [PMID:25676129] Liu Y, et al. AtGIS, a C2H2 zinc-finger transcription factor from Arabidopsis regulates glandular trichome development through GA signaling in tobacco. Biochem. Biophys. Res. Commun., 2017. 483(1): p. 209-215 [PMID:28034756] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Kim SY,Hyoung S,So WM,Shin JS The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. Plant Mol. Biol., 2018. 96(3): p. 315-326 [PMID:29335898]