PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121911001
Common NameGSBRNA2T00121911001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 285aa    MW: 31668.1 Da    PI: 9.8324
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121911001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.49.9e-11160203548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  +
  GSBRNA2T00121911001 160 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 203
                          899********************************998777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-13156220IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588158210IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-11160214No hitNo description
PfamPF001702.5E-9160204IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-13160211No hitNo description
CDDcd147032.43E-22161211No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAQLPPKIPT MTTTTTPHWP DFSSQKLPSI AATAAATAAT AGQQNPTWMD EFLDFSSTRR  60
GTHRRSISDS IAFLEAPSSG VGNHHFDRFD DEQFMSMFND DVHQNHHNNH HGSVNGNVGH  120
TRSSSNTSTP QCKTEPQDGA PSSANQNSGG SSGNRINDPK RVKRILANRQ SAQRSRVRKL  180
QYISELERSV TSLQTEVSVL SPRVAFLDHQ RLLLNVDNSA IKQRIAALAQ DKIFKDAHQE  240
ALKREIERLR QVYHQQSLKK MENNVSDQSP ADIKPSVEKE QLNA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121911001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4013001e-173AF401300.1 Arabidopsis thaliana transcription factor bZIP61 (BZIP61) mRNA, complete cds.
GenBankAY0873561e-173AY087356.1 Arabidopsis thaliana clone 34553 mRNA, complete sequence.
GenBankAY0930531e-173AY093053.1 Arabidopsis thaliana pelota-like protein (At3g58120) mRNA, complete cds.
GenBankBT0087281e-173BT008728.1 Arabidopsis thaliana At3g58120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116504.11e-170PREDICTED: basic leucine zipper 61
RefseqXP_013663628.11e-170basic leucine zipper 61-like
SwissprotQ9M2K41e-165BZP61_ARATH; Basic leucine zipper 61
TrEMBLM4CT381e-177M4CT38_BRARP; Uncharacterized protein
STRINGBra007380.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-132bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]