PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00121844001 | ||||||||
Common Name | GSBRNA2T00121844001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 281aa MW: 32457.3 Da PI: 5.6173 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.3 | 2.9e-29 | 115 | 202 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p GSBRNA2T00121844001 115 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 202 9******************************************999..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-27 | 115 | 202 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MRWCIKERRS VYIEMNVDFR IDNGDADGMM MTISVENHNE MGESSGQAMI EQDDDENHNE 60 IGESSNQEMP LEQDEKVDPD SIPLAVSDMA EEEVQGGDEP YVGQEFESEA AAHGFYNAYA 120 TKVGFVIRVS KLSRSRHDGS PIGRQLVCNK EGYRLPSKRD KVIRQRAETR VGCRAMILIR 180 KENSGKWVIT KFAKEHNHPL MPGRVRRGCI YDQYPNEHDK IQELMQQLAA EKKRAATYKR 240 HLEMLFEQIE QHNESLTKRI QHIVDNVRDL EQRDHQQNQV * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25417 | 0.0 | flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00121844001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058089 | 0.0 | AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds. | |||
GenBank | AY143081 | 0.0 | AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013663721.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
TrEMBL | A0A3P6FXH6 | 0.0 | A0A3P6FXH6_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g093280.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-164 | FAR1 family protein |
Publications ? help Back to Top | |||
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