PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121789001

Common Name

GSBRNA2T00121789001, LOC106449684, LOC106449685

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 187aa MW: 22024.8 Da PI: 7.7899

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121789001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.6	3e-09	75	127	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r +rk +NRe+ArrsR +K++ +ee +L+ eN++L +++ ++ + GSBRNA2T00121789001 75 RRKKRKLSNRESARRSRVKKQKHLEEMNIQLNQLKIENRELENQIRYVLQHFQ 127 799***********************************999988876655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-9	69	122	No hit	No description
SMART	SM00338	5.0E-11	71	135	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.1E-6	72	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.059	73	136	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.76E-9	75	125	No hit	No description
CDD	cd14702	5.27E-18	76	127	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MMSTIHPVLS CEPGQTTHVP AFETGFTPWD NSHLFSVFDS SMNIIPHSVH EYLSPDSVNR 60 SGPDVVPTDS YTDERRKKRK LSNRESARRS RVKKQKHLEE MNIQLNQLKI ENRELENQIR 120 YVLQHFQRTE TENNRLRLEQ RLLHSMVLNI RQVLMLHQID RSSDYVTWPY DNNTRVTVQH 180 DPVCDF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	80	ERRKKRKL
2	74	95	RRKKRKLSNRESARRSRVKKQK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121789001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746865.1	1e-137	basic leucine zipper 4-like
Refseq	XP_013746866.1	1e-137	basic leucine zipper 4-like
TrEMBL	A0A0D3DRP4	1e-135	A0A0D3DRP4_BRAOL; Uncharacterized protein
STRING	Bo8g079020.1	1e-136	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	3e-62	basic leucine-zipper 5

Link Out ? help Back to Top
Entrez Gene	106449684 \| 106449685

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]