PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00121635001 | ||||||||
Common Name | GSBRNA2T00121635001, LOC106435248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 33432.7 Da PI: 4.6447 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe ++++ e++++LA++lgL+ rqV vWFqNrRa++k GSBRNA2T00121635001 60 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 113 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.9 | 4.2e-41 | 59 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy Lk++yd+l+++ ++L++++++L +e GSBRNA2T00121635001 59 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLLQE 148 69*************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 +++ GSBRNA2T00121635001 149 ISK 151 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-18 | 52 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-15 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.25E-16 | 60 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 63 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.7E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.7E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-16 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMKRLSSSDS MCGLVSNSPD EQSPRGYGSN FQSMLDGYEE DGTIVEEYSG NHHHMGLSEK 60 KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ VAVWFQNRRA RWKTKQLEKD 120 YGLLKSQYDS LRHNFDSLRR DNDSLLQEIS KMKGKINGED EDNNNVKATT ESDISAVKEE 180 EDPMPSSPPQ FLEHSTGFNY RRSFTDLRDL MPNPVVEAGS SDSCDSSAVL NEETSSENGR 240 LTPPPPATVA GGSFLQFVKT EDHDEFFSGE EACGGFFSDE QPPSLNWYSA SDHWT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00121635001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352732 | 1e-163 | AK352732.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130694.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-16-like isoform X2 | ||||
Refseq | XP_013731663.1 | 0.0 | homeobox-leucine zipper protein ATHB-16-like isoform X2 | ||||
Swissprot | Q940J1 | 0.0 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A3P5Z0V2 | 0.0 | A0A3P5Z0V2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D5Q1 | 0.0 | M4D5Q1_BRARP; Uncharacterized protein | ||||
STRING | Bra011808.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-169 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Entrez Gene | 106435248 |
Publications ? help Back to Top | |||
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