PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121599001
Common NameGSBRNA2T00121599001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 452aa    MW: 49438.1 Da    PI: 9.5779
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121599001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.8e-25209252144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e
  GSBRNA2T00121599001 209 DPEPGRCRRTDGKKWRCSKDAVPDQKYCERHINRGRHRSRKPVE 252
                          79***************************************998 PP
2QLQ54.63.3e-19145181137
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll  iqk
  GSBRNA2T00121599001 145 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIQK 181
                          59*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-12145181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.884146181IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-13146180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479209253IPR014977WRC domain
PfamPF088794.9E-21210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDLGSVTGNV NGSPSLKELR ESKQDRSGFD GEDCLQQSSK LARTIAEDKH LPSSYAAAYS  60
RPMSFHQGIP LARSASLLSS DSRRQEHMLS FSDKPEAFDF SKYVGLDNNK NSLSPFLHQL  120
PPPYCRTPGG GYGSGGMMMS MQGKGPFTLT QWAELEQQAL IYKYITANVP VPSSLLISIQ  180
KSFYPYRSFP PSSFGWGTFH LGFAGGKMDP EPGRCRRTDG KKWRCSKDAV PDQKYCERHI  240
NRGRHRSRKP VEVQPGQTAA SKAVASRNTA SQSPNNRVQN VIYPSTVNLP PKEQRNNNNS  300
SFGFGHVTSP SLLTSSYLDF SINQNKPEEL KSDWTQLSMS IPVASSSPSS TAQDKTTLSP  360
LRLDLPIQSQ QETLEAARKV NTWIPISWGN SLGGPLGEVL NSTTSSPTLG SSPTGVLQKS  420
TFCSLSNSSS VTSPVADNNR NNNVDYFHYT T*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Detected in young leaf primordium. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:21036927}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121599001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6989870.0JN698987.1 Brassica rapa subsp. pekinensis growth-regulating factor 2J mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133704.10.0PREDICTED: growth-regulating factor 2
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLM4D5M40.0M4D5M4_BRARP; Uncharacterized protein
STRINGBra011781.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-162growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]