PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121598001

Common Name

GSBRNA2T00121598001, LOC106369643

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 247aa MW: 28586.2 Da PI: 6.5244

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121598001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.8	8.5e-12	138	185	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++ +r+++NRe+ArrsR R++ i++L++ v +L+ eN++L ++l GSBRNA2T00121598001 138 RKRKRMESNRESARRSRMRRQSHIDNLRNQVNQLDLENRELGNRLRLV 185 67899**********************************999666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.8E-11	128	183	No hit	No description
SMART	SM00338	2.0E-14	134	198	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	136	199	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-9	138	183	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.31E-10	138	186	No hit	No description
CDD	cd14702	2.04E-18	139	185	No hit	No description
PROSITE pattern	PS00036	0	141	156	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLSTVPAISF LEPGTVNHFS GFQTGFTPWE GDCFDLLSMN QFLIEPVVPS PCYGESDSGL 60 VRTNSGFDDI KTGSDESCAG FIKPGFEDTV SSQGLLCTQG DKPDPDDPKQ WTALANFEPG 120 EKKHNRNKLI QPEMTDERKR KRMESNRESA RRSRMRRQSH IDNLRNQVNQ LDLENRELGN 180 RLRLVIYHLQ QVNTDNNRLV TEQEMLRLRF SELRRILILR QLQQQQQWEL NNRRMIMYEQ 240 NPSTII*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121598001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013665225.1	0.0	light-inducible protein CPRF2
TrEMBL	A0A3P5Z0Q1	0.0	A0A3P5Z0Q1_BRACM; Uncharacterized protein
STRING	Bra011780.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7855	18	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37730.1	2e-77	basic leucine-zipper 7

Link Out ? help Back to Top
Entrez Gene	106369643

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]