PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121155001
Common NameGSBRNA2T00121155001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 22050.6 Da    PI: 4.8232
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121155001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-182070155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  GSBRNA2T00121155001 20 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFQTAEMAMRAHDVAALSIKG 70
                         68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-112070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-312179IPR001471AP2/ERF domain
PROSITE profilePS5103222.4712178IPR001471AP2/ERF domain
SMARTSM003805.9E-352184IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-212178IPR016177DNA-binding domain
CDDcd000182.07E-312280No hitNo description
PRINTSPR003673.1E-102233IPR001471AP2/ERF domain
PRINTSPR003673.1E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVDSSSLGSD KEKKGGSKQP VYRGVRMRSW GKWVSEIREP RKKSRIWLGT FQTAEMAMRA  60
HDVAALSIKG SSAILNFPEL SDSLPRPVSL SPRDVRAAAT KAALMDFGTK QVRHARAESE  120
SNETATESNA SISDDLEKIV ELPSLGTSLD ESNEFVFYDT LEDLVFMPSW LRGGPGDDFT  180
YNNNDYPLNS VFDESFSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-191679973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121155001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125436.11e-135PREDICTED: ethylene-responsive transcription factor ERF043
SwissprotQ9M0802e-90ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLM4D4H91e-134M4D4H9_BRARP; Uncharacterized protein
STRINGBra011383.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.14e-89ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]