PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121031001
Common NameGSBRNA2T00121031001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 367aa    MW: 41478.8 Da    PI: 10.6517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121031001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-19221011198
                          HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++s+ l +p +f+++h +g k+e++t++l++  s r+W+vk+  ++++    lt+GWkeF+ka++L++gD+v+F+++g++ f  +v++f 
  GSBRNA2T00121031001  22 FQSH-LNIPVTFFSKHiEG-KHEGRTVKLRSdCSDRTWKVKI--EGHR----LTDGWKEFAKAHDLRVGDVVIFRHEGDMLF--HVTAFG 101
                          5555.99*********644.46778****997899*******..6666....***********************9999988..888776 PP
2B361.71.2e-19149242298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          f++ +++++l++g + +p +fa+++g++k + + + l++++g++We kl+ + +sg++++ ++W++F+ a +Lk gD++ Fkl + ++++
  GSBRNA2T00121031001 149 FSQSVTASNLSRGAVGVPLDFARRNGLNKGR-RVIALRNQEGKTWESKLK-STRSGQVFICRNWRSFCTASKLKIGDSFQFKLLQ-NTET 235
                          6788999*********************866.69***************5.55556788899********************999.6666 PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          +v+++++
  GSBRNA2T00121031001 236 PVFQLCS 242
                          9999997 PP
3B345.31.6e-142463261798
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                           lp +f++ ++++k++  +++l d++  +W++kl+ + +sg+  ++ ++ Wk+F+ ang+ +g++++++l++r +   l++k+++
  GSBRNA2T00121031001 246 HLPVHFTRGNKLNKPG--KIVLVDKDKVEWSMKLNQDSRSGTmyIMGGTAWKSFCAANGVVVGESLTLELIRRgMI--LLLKFCS 326
                          69*********99776..7***************7755555554444588*********************96444..4777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-258104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-239109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59211103IPR003340B3 DNA binding domain
CDDcd100171.19E-1912100No hitNo description
SMARTSM010191.5E-2414103IPR003340B3 DNA binding domain
PfamPF023625.6E-132498IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-20141241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19144241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-15148242No hitNo description
PROSITE profilePS5086313.563148244IPR003340B3 DNA binding domain
SMARTSM010192.1E-25149244IPR003340B3 DNA binding domain
PfamPF023622.9E-19149242IPR003340B3 DNA binding domain
CDDcd100173.80E-15227326No hitNo description
SMARTSM010191.3E-10245328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-13246327IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-13246327IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-14246331IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787247327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEKASLLTPA NPHFFQPLLT GFQSHLNIPV TFFSKHIEGK HEGRTVKLRS DCSDRTWKVK  60
IEGHRLTDGW KEFAKAHDLR VGDVVIFRHE GDMLFHVTAF GTSFCEIQYV LSGIHVKVKE  120
ESEEIGNNGI IHLQSSRREK ESSSKPTCFS QSVTASNLSR GAVGVPLDFA RRNGLNKGRR  180
VIALRNQEGK TWESKLKSTR SGQVFICRNW RSFCTASKLK IGDSFQFKLL QNTETPVFQL  240
CSLSKHLPVH FTRGNKLNKP GKIVLVDKDK VEWSMKLNQD SRSGTMYIMG GTAWKSFCAA  300
NGVVVGESLT LELIRRGMIL LLKFCSKMEQ PPFKTKARKH KRARVQRLTR ESRSEDDVSS  360
QEGIVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121031001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-180AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650511.10.0B3 domain-containing protein REM8-like
RefseqXP_018512638.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotO817781e-147REM9_ARATH; B3 domain-containing protein REM9
TrEMBLA0A0D3A2T30.0A0A0D3A2T3_BRAOL; Uncharacterized protein
STRINGBo1g011080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-147B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Wang S, et al.
    Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006027
    [PMID:27138552]