PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00120665001 | ||||||||
Common Name | GSBRNA2T00120665001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29094.8 Da PI: 6.4475 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.8e-08 | 77 | 124 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L +l+P + +k Ka +L + ++Y++sLq GSBRNA2T00120665001 77 SHSLAERVRREKIGERMKLLEDLVPGC----NKVTGKALMLDEIINYVQSLQ 124 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.73E-7 | 71 | 128 | No hit | No description |
SuperFamily | SSF47459 | 4.06E-16 | 71 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.9 | 73 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-16 | 73 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 77 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-8 | 79 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLTHEHDLVS RANVLELAPT NEHVLIRHIL EGFLVTAEGK GGKRRRQDEE KEDNTKAPEP 60 PKDYIHVRAR RGQATDSHSL AERVRREKIG ERMKLLEDLV PGCNKVTGKA LMLDEIINYV 120 QSLQRQVEFL SMKLSSVNDT RLEFNVDALV SKDVMIPTSS NRLHEAGLQA ESLSHHSYNN 180 NSQLHTNVSS CNMMLQSPVN SLETSTLASS FTHLPTLTQF TDSISQYQMF SQEDLQSIVG 240 MGVAHNPNHE SQNMKIEL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00120665001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488610 | 1e-145 | AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | BT002945 | 1e-145 | BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds. | |||
GenBank | BT005637 | 1e-145 | BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618974.1 | 1e-164 | PREDICTED: transcription factor bHLH78-like isoform X1 | ||||
Refseq | XP_013677716.1 | 1e-164 | transcription factor bHLH78-like | ||||
Swissprot | Q9FJL4 | 1e-129 | BH078_ARATH; Transcription factor bHLH78 | ||||
TrEMBL | A0A3N6SRV4 | 1e-161 | A0A3N6SRV4_BRACR; Uncharacterized protein | ||||
STRING | Bra020691.1-P | 1e-157 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48560.1 | 1e-132 | bHLH family protein |
Publications ? help Back to Top | |||
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