PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00120370001 | ||||||||
Common Name | GSBRNA2T00120370001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 279aa MW: 30486.8 Da PI: 5.1845 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 54.2 | 3.1e-17 | 120 | 171 | 3 | 54 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++kr rr+++NR++ArrsRqRK+++++ Le v++L++ N++L k+l ++ GSBRNA2T00120370001 120 DVKRIRRMYSNRISARRSRQRKQEQLADLESQVDSLKGVNSTLYKQLIDATQ 171 68*****************************************988765555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.9E-13 | 113 | 173 | No hit | No description |
SMART | SM00338 | 1.9E-14 | 118 | 182 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.358 | 120 | 166 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.1E-12 | 121 | 171 | No hit | No description |
Pfam | PF00170 | 4.0E-14 | 121 | 166 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 7.89E-18 | 123 | 174 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 125 | 140 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.0E-4 | 189 | 267 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDGHTAKDIG MKKSASELAL QELLTKFPLD PSFDLMNWDY TCELRDSLLK SESLTPAGLF 60 LDAQSSICEN LSADSPVSAN KPEAKRAARG TVSVYTDDHS DEEDAETEAG QSEMTNDPND 120 VKRIRRMYSN RISARRSRQR KQEQLADLES QVDSLKGVNS TLYKQLIDAT QQFRSAGTNN 180 RVLKSDVETL RVKVKLAEDL IARGSLTSSL NQLLQTHLSP PQHSINSLHY TGNNTSPAIT 240 VHSDQSMFPG ITISGQNSSP GLGNVSSEAV SCVSDIWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | RRSRQRK |
2 | 134 | 141 | RRSRQRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00120370001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF310223 | 0.0 | AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds. | |||
GenBank | AK226873 | 0.0 | AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013700428.1 | 0.0 | basic leucine zipper 9-like | ||||
Swissprot | Q9FUD3 | 1e-168 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A3P6B9K8 | 0.0 | A0A3P6B9K8_BRACM; Uncharacterized protein | ||||
STRING | Bra020471.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6370 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-158 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
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