PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119925001
Common NameGSBRNA2T00119925001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 278aa    MW: 30238.6 Da    PI: 4.8598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119925001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.4e-0998119224
                  AP2   2 gykGVrwdkkrgrWvAeIrdpse 24 
                          +y+GVr+++ +g+W+AeIrdps 
  GSBRNA2T00119925001  98 KYRGVRQRP-WGKWAAEIRDPSR 119
                          8********.**********854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-1097120IPR001471AP2/ERF domain
SMARTSM003801.5E-898137IPR001471AP2/ERF domain
CDDcd000183.54E-1298130No hitNo description
PfamPF008471.4E-498118IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-698131IPR016177DNA-binding domain
PROSITE profilePS5103211.31198167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEAEKNVAKL SQHNIMTATT VTQPRILRIS VSDPYATDSS SDEENDFADI SRKRRRVKKF  60
INEVVLESTV SDKDRPKKKK RPNTKTTAST AVTAPARKYR GVRQRPWGKW AAEIRDPSRR  120
LRGPNALTNF SPPPPPPATE NGEEASKEMD GVSDITTSGG GECLGSPVSV LQTPFSGEST  180
AAIAVKEEFS GVSTTAVEVK EEPSLTVSDT FTDFSSPLFL HDDVFGFPTT MPDCFGDEFF  240
ADMSFGFGSG SGFSSWHVED HFQDIGDLFG SDPLLTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155RKRRR
25158RKRRRVKK
35256KRRRV
47379DRPKKKK
57581PKKKKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119925001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626211.11e-172PREDICTED: ethylene-responsive transcription factor CRF1
SwissprotO825038e-92CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P6AUH41e-173A0A3P6AUH4_BRAOL; Uncharacterized protein
STRINGBo3g045150.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-88cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]