PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00118765001
Common NameGSBRNA2T00118765001, LOC106358595, LOC106358596
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 455aa    MW: 49570.2 Da    PI: 6.9449
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00118765001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17140189155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSBRNA2T00118765001 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
                          78*******************......55************************997 PP
2AP239.81.1e-12232278151
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  GSBRNA2T00118765001 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAI 278
                          89********.7******5553..2.26**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-15140197IPR016177DNA-binding domain
PfamPF008475.1E-9140189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-17141197IPR001471AP2/ERF domain
CDDcd000181.09E-10141196No hitNo description
SMARTSM003801.2E-32141203IPR001471AP2/ERF domain
PROSITE profilePS5103217.82141197IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-16232291IPR016177DNA-binding domain
PfamPF008472.5E-8232278IPR001471AP2/ERF domain
CDDcd000189.07E-23232292No hitNo description
Gene3DG3DSA:3.30.730.101.7E-15233291IPR001471AP2/ERF domain
SMARTSM003802.6E-29233296IPR001471AP2/ERF domain
PROSITE profilePS5103215.277233290IPR001471AP2/ERF domain
PRINTSPR003671.2E-5234245IPR001471AP2/ERF domain
PRINTSPR003671.2E-5272292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INAEADDDSC STRAFTLNFD  60
ILKVGSSGDG CGGGGDESTA VTKEFFPVAG DCGHLRGSSS RSWIDLSFDG SRQGETNLVA  120
PAPAPAPVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY  180
DRAAIKFRGV DADINFTLGD YEEDMKQVQN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH  240
KCGRWEARMG QFLGKKYVYL GLFDSEVEAA RAYDKAAISS NGREAVTNFE LSSYQNETNS  300
ETNNQGAHDK LDLSLGMSLS PGNASKQNGR LFHYPSNTYE TQRGVSLTIG NEFMGKPVNA  360
PLPYGSSDHR AYWNGYNNPV EGRATEKRSE AEGGGMMSNW GWQGPGQTSA MRPQPPGPQP  420
QLFSVAAASS GFSNFRQQPP NDNASSLGYF YPQP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00118765001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6183171e-129KC618317.1 Cardamine flexuosa TOE1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103697.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_013653876.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_013653879.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLM4D6310.0M4D631_BRARP; Uncharacterized protein
STRINGBra011939.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]