PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00117770001

Common Name

GSBRNA2T00117770001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 204aa MW: 23217.3 Da PI: 6.215

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00117770001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	23.8	1e-07	1	18	35	52
G2-like 35 lmkvkgLtlehvkSHLQk 52 +m+vkgLt++hvkSHLQ GSBRNA2T00117770001 1 MMDVKGLTISHVKSHLQN 18 7****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-6	1	18	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMDVKGLTIS HVKSHLQNIH FGHSLILYYY YYFETEENSL FSIRRQDTEE DYLQDNLSLH 60 TRNDCPTGFH TFSLSSHSSL RGRRKGHTSE SRGGDDVDDS LHIMNMKTNG TTTFPSHHFH 120 QNTEKETNPW HEHEHEHKHE HEEEELSLSL SLNHHHLRSN GSSVSETSDA VSTCSAPFVN 180 KDCFGSSPKI DLDLNLSISL LGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00117770001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114210.1	1e-105	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A3P5XZV7	1e-105	A0A3P5XZV7_BRACM; Uncharacterized protein
STRING	Bra017425.1-P	4e-96	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	7e-32	G2-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]