PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117397001
Common NameGSBRNA2T00117397001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31583.2 Da    PI: 9.7762
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117397001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.61.2e-312777151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  GSBRNA2T00117397001 27 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 77
                         79***********************************************96 PP
2K-box90.62.8e-301111931698
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+ Le+qL++slk+iR+ +++++l+q+++lq ke++l+e+nk+Lr +l
  GSBRNA2T00117397001 111 SSQQEYLKLKERYEALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRL 193
                          68*****************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-411978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5151979IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-332096IPR002100Transcription factor, MADS-box
CDDcd002657.87E-452094No hitNo description
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322141IPR002100Transcription factor, MADS-box
PfamPF003192.7E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-324156IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-325677IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.009109199IPR002487Transcription factor, K-box
PfamPF014861.2E-24112193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRNCKVKEKK KREGKKRRMG RGRVELKRIE NKINRQVTFA KRRNGLLKKA YELSVLCDAE  60
VALIIFSNRG KLYEFCSSSS MIRTLERYQK CNYGPPEPNV PSREALAVEL SSQQEYLKLK  120
ERYEALQRTQ RNLLGEDLGP LSTKELELLE RQLDSSLKQI RALRTQFMLD QLNDLQSKER  180
MLNETNKTLR LRLADGYQMP LQLNPSQEDR HVDYGRHDQQ QHSHHAFFQP LECEPILQMG  240
YQGHQNHGME AGPSAINYML GWLPYDTSSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-63931961104Developmental protein SEPALLATA 3
4ox0_B4e-63931961104Developmental protein SEPALLATA 3
4ox0_C4e-63931961104Developmental protein SEPALLATA 3
4ox0_D4e-63931961104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.93720.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117397001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY086260.0Y08626.1 S.alba mRNA for MADS D protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721595.10.0agamous-like MADS-box protein AGL9 homolog isoform X2
RefseqXP_013721597.10.0agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotO040671e-180AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A0D3D6H70.0A0A0D3D6H7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F0490.0A0A3P6F049_BRAOL; Uncharacterized protein
STRINGBo7g050020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62202644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.21e-154MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Bonhomme F,Sommer H,Bernier G,Jacqmard A
    Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis.
    Plant Mol. Biol., 1997. 34(4): p. 573-82
    [PMID:9247539]