PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00117057001 | ||||||||
Common Name | GSBRNA2T00117057001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 188aa MW: 21910.7 Da PI: 6.5254 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 74 | 128 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t+eql+ Le F+++++++ e++ +L+k+lgL+ rq+ vWFqNr+a++k+ GSBRNA2T00117057001 74 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKN 128 67899************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 110.6 | 1.1e-35 | 74 | 164 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+++++eq+klLE sF+ee kL+perK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++e +L++ + GSBRNA2T00117057001 74 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDVICQEKKLLQEELIQLKAMI 163 9**************************************************************************************887 PP HD-ZIP_I/II 92 k 92 + GSBRNA2T00117057001 164 R 164 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-19 | 56 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.309 | 69 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-16 | 74 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-15 | 74 | 130 | No hit | No description |
SMART | SM00389 | 4.8E-17 | 74 | 133 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 76 | 136 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.8E-5 | 100 | 109 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.8E-5 | 109 | 125 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEEDNMECWT SPFINGQSSS NFIYPFHSFN NVSGTILETQ GGRPLHEHYY AAPPAMVESS 60 YGEASNTNNG YETKKKKMTN EQLKLLEISF QEEMKLDPER KMKLSKELGL QPRQIAVWFQ 120 NRKARWKNKQ LEHLYESLRQ EFDVICQEKK LLQEELIQLK AMIRENGASN NKQQTWENAL 180 SAQFQLN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00117057001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056569 | 6e-68 | DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013748420.1 | 1e-135 | homeobox-leucine zipper protein ATHB-22 | ||||
Swissprot | Q4PSR7 | 6e-75 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | M4CM22 | 1e-134 | M4CM22_BRARP; Uncharacterized protein | ||||
STRING | Bra005259.1-P | 1e-135 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36610.1 | 6e-67 | homeobox protein 22 |
Publications ? help Back to Top | |||
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