PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00115657001

Common Name

GSBRNA2T00115657001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 474aa MW: 52745.6 Da PI: 6.0421

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00115657001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.4e-11	307	352	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er RR+++N++f Lr +P+ K++K + L A+ YIk+L GSBRNA2T00115657001 307 NHVQAERLRREKLNQRFYALRATVPNV-----SKMDKTSLLGDAISYIKEL 352 6999********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.3E-47	39	221	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.285	303	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-16	306	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.26E-11	306	353	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-15	307	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-9	307	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-13	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDSLNTNVTA SMIDALMRSP SSGFWPPLSP ANPSPDSALQ KRLQAVLNGT HEAWTYAILW 60 TPSYYDYSGE SVLKWGDGIY KGEEADNTRR KRRRMTVAER EHWSIILPEL SSMTSDEDLP 120 VIDGEDDVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDHI LASGCERAKK 180 GGYSGLQTIV CIPLDNGVLE LGSTVEIKQN PDLFNKIRVV FSFEGSRDFS VYPQTVNFAT 240 STLERALHSP NQNYPEQIPI DDGELLHSAG DIDGSDHSDI EATVVPENKQ KKKRGRKLAN 300 GRKEPLNHVQ AERLRREKLN QRFYALRATV PNVSKMDKTS LLGDAISYIK ELKSRAENAE 360 SERNAIQILL NKLKEEMAGR NAVCRGGKNA SEIETANIDV KILGCDAMVR LESSKRNHPA 420 ARLMNAFMDL DVELNHASIS VIHDLMIQQA TVKMGSRMYT QDQLQAMLVS KIN*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDSLNTNVTA SMIDALMRSP SSGFWPPLSP ANPSPDSALQ KRLQAVLNGT HEAWTYAILW  60
TPSYYDYSGE SVLKWGDGIY KGEEADNTRR KRRRMTVAER EHWSIILPEL SSMTSDEDLP  120
VIDGEDDVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDHI LASGCERAKK  180
GGYSGLQTIV CIPLDNGVLE LGSTVEIKQN PDLFNKIRVV FSFEGSRDFS VYPQTVNFAT  240
STLERALHSP NQNYPEQIPI DDGELLHSAG DIDGSDHSDI EATVVPENKQ KKKRGRKLAN  300
GRKEPLNHVQ AERLRREKLN QRFYALRATV PNVSKMDKTS LLGDAISYIK ELKSRAENAE  360
SERNAIQILL NKLKEEMAGR NAVCRGGKNA SEIETANIDV KILGCDAMVR LESSKRNHPA  420
ARLMNAFMDL DVELNHASIS VIHDLMIQQA TVKMGSRMYT QDQLQAMLVS KIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-42	36	223	6	194	Transcription factor MYC3
4rqw_B	2e-42	36	223	6	194	Transcription factor MYC3
4rs9_A	2e-42	36	223	6	194	Transcription factor MYC3
4yz6_A	2e-42	36	223	6	194	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00115657001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013614723.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	1e-148	BH028_ARATH; Transcription factor bHLH28
TrEMBL	A0A0D2ZTS5	0.0	A0A0D2ZTS5_BRAOL; Uncharacterized protein
STRING	Bo01130s010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	1e-150	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]