PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00115653001

Common Name

GSBRNA2T00115653001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 510aa MW: 56415.4 Da PI: 5.275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00115653001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	340	385	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er RR+++N +f Lr +P+ K++Ka+ L A+ YI++L GSBRNA2T00115653001 340 NHVQAERLRREKLNMRFYALRATVPNV-----SKMDKASLLGDAICYINEL 385 6999********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.9E-48	39	219	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.821	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-16	339	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.26E-11	339	386	No hit	No description
Pfam	PF00010	6.0E-8	340	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-14	340	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-13	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MDHLNTNVTA SMIEALMNSP SSDSWPPLSP AIPSPDSALQ KRLQAVLNGT HEAWTYAIFW 60 TPSYYDFSGD SVLKWGDGIY KGEEADKTRW RRRKVAENEN RSTILRELSS MISDEALLVM 120 EDEDDVEVSD PSWFYLTSMT VSFGSGFGLP GKAFATYKPV WITGSELILG SGCDRAKTGG 180 EFGLQTIVCI PLDNGVLELG STAEIQQTPD LLNKIRVVFS FEGSRDFSGD PNSNSFPLFS 240 AQLDNGGGSS TVTFSPYPGP FYPQILNSLS QEINFDMLEG NHSGEIHSAN RGAYPGQIQN 300 DDGHIDDFVH SDIEATVVRD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMRFYALR 360 ATVPNVSKMD KASLLGDAIC YINELKSRAE DAESKKNAIQ MELIKLREEI AGRNADSSVC 420 RGGENASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD 480 LMIQQATVKM GSRTYTPDQL RAMLVSKIN*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MDHLNTNVTA SMIEALMNSP SSDSWPPLSP AIPSPDSALQ KRLQAVLNGT HEAWTYAIFW  60
TPSYYDFSGD SVLKWGDGIY KGEEADKTRW RRRKVAENEN RSTILRELSS MISDEALLVM  120
EDEDDVEVSD PSWFYLTSMT VSFGSGFGLP GKAFATYKPV WITGSELILG SGCDRAKTGG  180
EFGLQTIVCI PLDNGVLELG STAEIQQTPD LLNKIRVVFS FEGSRDFSGD PNSNSFPLFS  240
AQLDNGGGSS TVTFSPYPGP FYPQILNSLS QEINFDMLEG NHSGEIHSAN RGAYPGQIQN  300
DDGHIDDFVH SDIEATVVRD NKRKKKRGRK LANGRKEPLN HVQAERLRRE KLNMRFYALR  360
ATVPNVSKMD KASLLGDAIC YINELKSRAE DAESKKNAIQ MELIKLREEI AGRNADSSVC  420
RGGENASENE TANIDVKILG CDAMVRLESS KRNHPAARLM NAFMDLDVEL NHASISVIHD  480
LMIQQATVKM GSRTYTPDQL RAMLVSKIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-47	36	221	6	194	Transcription factor MYC3
4rqw_B	3e-47	36	221	6	194	Transcription factor MYC3
4rs9_A	3e-47	36	221	6	194	Transcription factor MYC3
4yz6_A	3e-47	36	221	6	194	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	329	KRKKKRGRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00115653001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114323.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	1e-165	BH028_ARATH; Transcription factor bHLH28
TrEMBL	A0A3P6DS61	0.0	A0A3P6DS61_BRAOL; Uncharacterized protein
STRING	Bra017520.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	1e-158	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]