PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00115637001
Common NameGSBRNA2T00115637001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 827aa    MW: 91975.4 Da    PI: 5.0934
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00115637001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21113168156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  GSBRNA2T00115637001 113 KKRYHRHTDRQIQEMEALFKENPHPDDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 168
                          688899***********************************************998 PP
2START142.73.6e-453255522206
                          HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWde 74 
                          +a ++ qel k+ + eep+Wv             +n++e+++ f+             +++ea++a +vv+m++ +lv  +l+   +W+e
  GSBRNA2T00115637001 325 FAVSCVQELTKMCDTEEPLWVNKKldkiggetLCLNEEEYMRLFPW--PmeknnnngdFRTEASKANAVVIMNSITLVDAFLNAD-KWSE 411
                          67899****************9998877776655677777776643..1346678999***************************.**** PP

                          T-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEE CS
                START  75 tla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgil 153
                          ++     +a+t++ issg     g l lm+ae+q+lsplvp R+ +f+Ry +q ++ g w+ivd  +ds +++++ +++    + pSg++
  GSBRNA2T00115637001 412 MFCsivaRAKTVQIISSGvsgasGSLMLMYAEFQVLSPLVPtREAYFLRYVEQnSENGNWAIVDFPIDSFNDQNSPHEYK---RKPSGCI 498
                          **99999**************************************************************99998445555...5****** PP

                          EEEECTCEEEEEEEE-EE-.-SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 154 iepksnghskvtwvehvdl.kgrlphwllrslvksglaegaktwvatlqrqcek 206
                          i++++ng+skv wvehv++  +r++h+ +   vksg+a+ga++wv  l+rqce+
  GSBRNA2T00115637001 499 IQDMPNGYSKVKWVEHVEVvVERHVHETFAEYVKSGMAFGASRWVDVLERQCER 552
                          ******************7369******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-20104171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-22107176IPR009057Homeodomain-like
PROSITE profilePS5007117.799110170IPR001356Homeobox domain
SMARTSM003892.1E-19111174IPR001356Homeobox domain
CDDcd000869.83E-20113171No hitNo description
PfamPF000461.7E-18113168IPR001356Homeobox domain
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PROSITE profilePS5084841.143315555IPR002913START domain
SuperFamilySSF559613.85E-28316554No hitNo description
CDDcd088751.32E-88319551No hitNo description
SMARTSM002341.4E-24324552IPR002913START domain
PfamPF018522.0E-37325552IPR002913START domain
SuperFamilySSF559612.2E-13589803No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MLTIGEESVM ISDNRFASPP PPASSSPATI QNPNFNFIPF NSFSSIIPKE EHGMMSMSMM  60
MMMGDGAVEE MMENGSVGGS FGSGSEQAED PKSGTEFDVN ELRDDEQPPP AKKKRYHRHT  120
DRQIQEMEAL FKENPHPDDK QRQRLSHELG LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR  180
ADNDNLKLEN SQLQAELRCL SCPSCGGPTV LGDIPFNELH IENCRLREEL DRLCCIASRY  240
TDRPMQSMPP SQTLINPASE LPHHQPSLEL DISAYAGNYP DHPSSDLMSL PPQDTACFFP  300
TQTINNSSNN NMLLADEEKV MAMEFAVSCV QELTKMCDTE EPLWVNKKLD KIGGETLCLN  360
EEEYMRLFPW PMEKNNNNGD FRTEASKANA VVIMNSITLV DAFLNADKWS EMFCSIVARA  420
KTVQIISSGV SGASGSLMLM YAEFQVLSPL VPTREAYFLR YVEQNSENGN WAIVDFPIDS  480
FNDQNSPHEY KRKPSGCIIQ DMPNGYSKVK WVEHVEVVVE RHVHETFAEY VKSGMAFGAS  540
RWVDVLERQC ERMASLMARN ITDLGVIRSA DTRRNMMRLS QRMIKTFCVN ISTSYGQSWT  600
ALSETTKDTV RITTRKVCEP GQPTGVVLVA VSTTWLPFSH FKVFDLLRDQ HHHSLLEVLF  660
SGNSPHEVAH IANGSHPGNC ISLLRINVAS NSWHNVELML QESCVDNSGG LIVYSSVDVV  720
PIQHVMNIED PSNVPLLPLG FSVVPVNPPG EVEGISVNSI PPPSCLLTVG IQVLASNVPT  780
AKPNLSTVTT INNHLCSIVD QITSVLSSTI SPTIASSAAA AKQDVI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.157740.0microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00115637001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713146.10.0homeobox-leucine zipper protein HDG5-like
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A3P6DW050.0A0A3P6DW05_BRAOL; Uncharacterized protein
STRINGBo9g066790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]