PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114990001
Common NameGSBRNA2T00114990001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 813aa    MW: 92625.6 Da    PI: 5.0364
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114990001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07196221228
                          SSS-HHHHHHHHHHHHHTTTT-HHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa 28 
                          + WT+eE e l ++vk++G+  Wk I 
  GSBRNA2T00114990001 196 KFWTPEEVEALREGVKEYGKS-WKDIK 221
                          67*****************88.**996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-8190232IPR009057Homeodomain-like
SuperFamilySSF466893.44E-7192237IPR009057Homeodomain-like
CDDcd116607.77E-8196232No hitNo description
Gene3DG3DSA:3.30.200.205.5E-20262371No hitNo description
CDDcd139838.76E-149269529No hitNo description
SMARTSM002201.6E-57271529IPR000719Protein kinase domain
PROSITE profilePS5001139.199271529IPR000719Protein kinase domain
SuperFamilySSF561127.55E-64272530IPR011009Protein kinase-like domain
PfamPF000693.0E-48274529IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.101.2E-46372530No hitNo description
PROSITE patternPS001080395407IPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:3.10.20.908.6E-7588640No hitNo description
Gene3DG3DSA:1.10.510.101.2E-46702707No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MVTEELLEWE ADVKMALEDP DVYQRIREIN VRYTVVSFLT QLVKEQWGLL GSSTLESVAQ  60
RRFLKRKAEN NVESNRPNDV YESTERLESD TIDDANERRG SGEGETGNGD NMDVEGVGCL  120
ENDGIDKVIE QHGAEEERTM GAQEQEHESS LDKGCGLIVT QQDNASEKSS GSQRTCSGRV  180
RPRLPSPVSS VRRRKKFWTP EEVEALREGV KEYGKSWKDI KNANPAVFAE RTERYLVVSN  240
IAWEHQSEFW STMNMNQVSE YVETDPTGRY GRFEEVLGRG AMKTVYKAID EKLGIEVAWS  300
QVKLKEVLRS SVDLQRLYSE VHLLSTLNHK SIIRFYTSWI DVDSHNLNFI TELFTSGTLR  360
QYKNKYLRID IRAIKSWARQ ILEGLVYLHE HDPPVIHRDL KCDNIFVNGH LGQVKIGDLG  420
LARMLRDRRS AHSILGTPEF MAPELFEGNY NELIDVYSFG MCFLEMVTSE FPYSECNSPV  480
HIYKKVSSGK LPSAFYRVED IEAQIFIRKC LVPASQRVSA RELLQDPFLS SDESWMVYAR  540
GAGNLKPFLN ENEMDRLKLE DDELGRTQMT ITGRLKAEDN TILLEVIIAD ENGMAKKVAF  600
PFGIMNDTSI DVAMEMVKEL EITDWDPVEI AEMIDGEISS LVPGWRYEEG DETPHVYHSS  660
SSSQASFSNY MTRGRQDWLQ DDLHDETHSQ SSYSSGSLSN LNYTYVDENS SQPPAVNRTQ  720
NVTRFRPEES YHVRSGKANM HAASSSSNLR QASDNRTLPR NRSLADVQGQ LLQRSLTEEA  780
RIRRLIRTVG DVETVGFQSP YAVSRKPPSL RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5o2c_A8e-8526264118371Serine/threonine-protein kinase WNK3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066RRFLKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.209030.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtMay regulate flowering time by modulating the photoperiod pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114990001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak before dawn. {ECO:0000269|PubMed:12506983}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1900990.0KC190099.1 Brassica napus mitogen-activated protein kinase kinase kinase ZIK2.1 (ZIK2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620431.10.0PREDICTED: probable serine/threonine-protein kinase WNK4 isoform X2
SwissprotQ9LVL50.0WNK4_ARATH; Probable serine/threonine-protein kinase WNK4
TrEMBLA0A0D3AL900.0A0A0D3AL90_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DK650.0A0A3P6DK65_BRAOL; Uncharacterized protein
STRINGBo2g028640.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-63MYB_related family protein
Publications ? help Back to Top
  1. Nakamichi N, et al.
    Compilation and characterization of a novel WNK family of protein kinases in Arabiodpsis thaliana with reference to circadian rhythms.
    Biosci. Biotechnol. Biochem., 2002. 66(11): p. 2429-36
    [PMID:12506983]
  2. Hong-Hermesdorf A,Brüx A,Grüber A,Grüber G,Schumacher K
    A WNK kinase binds and phosphorylates V-ATPase subunit C.
    FEBS Lett., 2006. 580(3): p. 932-9
    [PMID:16427632]
  3. Guelette BS,Benning UF,Hoffmann-Benning S
    Identification of lipids and lipid-binding proteins in phloem exudates from Arabidopsis thaliana.
    J. Exp. Bot., 2012. 63(10): p. 3603-16
    [PMID:22442409]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]