PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00113604001

Common Name

GSBRNA2T00113604001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 184aa MW: 21322.9 Da PI: 8.5802

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00113604001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44	4.9e-14	71	129	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r++r+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + +e+ GSBRNA2T00113604001 71 RRAKRMVSNRESARRSRMRKKKQIEELQQQVEQLMILNHNLSEKVINLLESNHQILQEN 129 89******************************************999999988888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-14	67	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.22	69	132	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-10	71	127	No hit	No description
SuperFamily	SSF57959	4.38E-11	71	123	No hit	No description
Pfam	PF00170	5.4E-12	71	129	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.40E-16	72	123	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MESSSVHRSH HCFDIFEGMP PQDDHFNSAF LPNANFHVPL QSPNLSTRSN NRFHLDPNGE 60 HVYEGLVPDE RRAKRMVSNR ESARRSRMRK KKQIEELQQQ VEQLMILNHN LSEKVINLLE 120 SNHQILQENS QLKEKVSSFQ LLMAEMLIPV RNVDGGSIND RNLNHHHHLR GETSSRTNTF 180 FGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00113604001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013670354.1	1e-129	basic leucine zipper 43-like
TrEMBL	A0A398A3A9	1e-128	A0A398A3A9_BRACM; Uncharacterized protein
STRING	Bo7g098020.1	1e-126	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	9e-68	basic leucine-zipper 70

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]