PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00113417001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25430.6 Da PI: 8.7316 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.2 | 1.6e-39 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l GSBRNA2T00113417001 20 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSL 109 7***************************************************************************************** PP DUF260 91 kaelallkee 100 ++el ++++e GSBRNA2T00113417001 110 QSELTTVRTE 119 ****999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.189 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-40 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGIRRHVAVP PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPHKFA AVHKVFGASN 60 VSKMLLEVGE SQRGDAANSL VYEANLRLRD PIYGCMGAIS ALQHHIQSLQ SELTTVRTEI 120 LRHKYREAAT ITSLQNNNNN NFNNTTTSVS DHASLAASIL LPPPPPPPPP PRPPRLFSSQ 180 PAPPPTPPAS LPSPSMVVSS SSSNSSATNS IYNHPPSSTA GYSNSLSSDN NVHYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 13 | 131 | 4 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 13 | 131 | 4 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00113417001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634930.1 | 1e-171 | PREDICTED: LOB domain-containing protein 13 | ||||
Swissprot | Q9AT61 | 1e-111 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A0D3BTJ7 | 1e-170 | A0A0D3BTJ7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BXH1 | 1e-169 | A0A3P6BXH1_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo4g059520.1 | 1e-170 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-107 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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