PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00112451001

Common Name

GSBRNA2T00112451001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 262aa MW: 30396.3 Da PI: 5.6666

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00112451001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.1	8.2e-24	151	200	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e+++ yF++pi++AAkeL+v+lT+LK++ R++GI+RWPhRk+ s+ GSBRNA2T00112451001 151 KSLSREEIKPYFYMPITKAAKELNVGLTLLKKKSRELGISRWPHRKLMSI 200 789********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.142	135	220	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-20	153	200	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MTDHKQLRNW SQFDDYEFIQ EENLFSLFDH SLSFDYNSST NNPLSDIQTQ TWFSFQDIIN 60 VDPISTCFLA GDHTFMASDD VQAISTFSQD VFSGSWNEIT GNFNNHFEPI RNEMSSIGVP 120 NMEMILHESN NTMKEITCYK RRERTDGVLV KSLSREEIKP YFYMPITKAA KELNVGLTLL 180 KKKSRELGIS RWPHRKLMSI QGIITNLLDH LGKTEDERIR SKLTKALKIL EREKKMIEED 240 PNLEFGDETK RARACMSRSE T*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00112451001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013650739.1	0.0	protein RKD3-like
Swissprot	Q9FGD1	1e-83	RKD3_ARATH; Protein RKD3
TrEMBL	A0A397YSP6	0.0	A0A397YSP6_BRACM; Uncharacterized protein
STRING	Bra012122.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	4e-86	RWP-RK domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]