PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112014001
Common NameGSBRNA2T00112014001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 366aa    MW: 41020.2 Da    PI: 7.7536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112014001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-112753127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C+++ rtG C++G++C+F+H++
  GSBRNA2T00112014001 27 PGEPDCSYYIRTGLCRFGSTCRFNHPR 53
                         5789*********************96 PP
2zf-CCCH37.73.4e-127498327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C ++++tGtCk+G +CkF+H++
  GSBRNA2T00112014001 74 QPECEYYLKTGTCKFGVTCKFHHPR 98
                         799********************96 PP
3zf-CCCH382.8e-12120144327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f+rtG+Ck+G++CkF+H++
  GSBRNA2T00112014001 120 EVDCAYFLRTGHCKFGATCKFNHPQ 144
                          578********************97 PP
4zf-CCCH37.34.7e-12244270127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G  CkF+H++
  GSBRNA2T00112014001 244 PGQPECQFYMKTGDCKFGTVCKFHHPR 270
                          5789*********************96 PP
5zf-CCCH34.92.5e-11290316127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+ +Ck+G++CkF+H++
  GSBRNA2T00112014001 290 PGEPLCVFYSRYRICKFGPSCKFHHPM 316
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6992654IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-52653IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-82853IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-63154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-43253IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-57198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1087199IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-97498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-675100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-47798IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99117145IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6120146IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10120144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4123143IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22243271IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8245270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6247273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4249271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507289317IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5289316IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MINQEAMWQM NMTSDETMEP GSYPERPGEP DCSYYIRTGL CRFGSTCRFN HPRDRELVIA  60
TARMRGEYPE RIGQPECEYY LKTGTCKFGV TCKFHHPRNK AGIAGSVSLN MLGYPLRSNE  120
VDCAYFLRTG HCKFGATCKF NHPQPQPTTN LMVPTSGQQQ SYPWSRASFI PTPRWQDPSG  180
FTPLMMPQGV VWNPYTGQLG SVSPSGTGND HNNYRELQQN ESGSSVPQGG IYALPSESVF  240
PERPGQPECQ FYMKTGDCKF GTVCKFHHPR DRQTPPPDCL LSPIGLPLRP GEPLCVFYSR  300
YRICKFGPSC KFHHPMGVFT YDNTASETDE VMKTTTGHSR RLSVSETRQA ATISGQDTTI  360
DTTHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99721e-153flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112014001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134712.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A397ZZP90.0A0A397ZZP9_BRACM; Uncharacterized protein
STRINGBra001066.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]