PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111926001
Common NameGSBRNA2T00111926001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 523aa    MW: 57314.2 Da    PI: 4.6903
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111926001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.92.7e-15367405240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+C+Ck+s+Clk+YC+Cfaag +C e C+C++C+N+ 
  GSBRNA2T00111926001 367 SCKRCRCKRSRCLKLYCDCFAAGLYCVEPCSCQNCFNRP 405
                          589**********************************85 PP
2TCR444.3e-14453490239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +++gCnCkks C kkYCeC+  g+ Cs +C+C +CkN 
  GSBRNA2T00111926001 453 HMRGCNCKKSGCSKKYCECYLVGVGCSASCRCIGCKNI 490
                          889**********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-16366407IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.799367492IPR005172CRC domain
PfamPF036386.6E-11369404IPR005172CRC domain
SMARTSM011145.6E-13452493IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11455489IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDTPDKNRSS AVSYCNFEDS PVFQYINGLS PIEPVKADHA FHSFALASPS SLFSSPQIDC  60
IKRQDVLVQL KCSGPEEEMA NVSETEAFKE QVKVAIELAS SLRKGEDGCG SQMGSSDEVV  120
VPMEAENEVI KQSGELCRRI NELDADSDMV IQTEEMEAET GSGEQEIPNG KDSRICSFTV  180
VPQQFSNHSG NVVQPCSVQV AAGALDTTLR SSSNVTAFDS TDKAEDDDEE ANLQLSSKQR  240
SVRRRCLTFD LGGSYKRVPL RDSTNDLPLD VTSINEASSP QNCVDSSKQE TDEILPVPRT  300
IGLHLNALVN PYRNKITAKD GCVLSHAAEE FTTPVSTIRD LVACDNQIME EASERSMEGE  360
RVEELGSCKR CRCKRSRCLK LYCDCFAAGL YCVEPCSCQN CFNRPIHEDI VIRSRRNVEA  420
RNPLAFAPKV VLTSASATYF GEESNKTPAS ARHMRGCNCK KSGCSKKYCE CYLVGVGCSA  480
SCRCIGCKNI LCQTNEQFHL PCAVESDAVT INEEAKDHCD YI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1736949012121Protein lin-54 homolog
5fd3_B3e-1736949012121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369374RCRCKR
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111926001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893290.0AC189329.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134792.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLA0A398A0180.0A0A398A018_BRACM; Uncharacterized protein
STRINGBra001128.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.11e-167Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]