PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00111010001
Common NameGSBRNA2T00111010001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 349aa    MW: 40173.5 Da    PI: 5.9968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00111010001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-181702541298
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          k+++  lp+ f +++g+ ++e+ ++ l +e g+ W+  l+y kk g ++l++GW++F+++n+ +++D ++Fkl++ +++++v+++++
  GSBRNA2T00111010001 170 KTRLKFLPRGFSRSNGLMNREG-EIFLLNEYGKPWTALLSYYKKTGDVYLRRGWRNFCHENQKRANDLLTFKLVQ-EGTKPVLQLCS 254
                          555669*********8887665.9*************************************************98.89999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-17162256IPR003340B3 DNA binding domain
PfamPF023621.2E-17169254IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-17174257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-15175255IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-18176254No hitNo description
PROSITE profilePS5086312.562176255IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-4259307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-8264332IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-5269348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKLGAEFWSN NYDLTCFVKK KEEETAKQKT PEKKVEGNQQ EEKIETREKG LEEKATEIET  60
EMEEGQINEG WKNVSGGKAS RSPRMQELKY GQVKIATPSM FEALSNIGEN GEEIEEDKEK  120
VEDWEKEMVD SEESGKEEEK DNMEDMRKYG NKVVKVLEIG GRQQLPRQSK TRLKFLPRGF  180
SRSNGLMNRE GEIFLLNEYG KPWTALLSYY KKTGDVYLRR GWRNFCHENQ KRANDLLTFK  240
LVQEGTKPVL QLCSSMYNRG SSSTSEDRFL TLTLTHYNFK KCKLCLPATF LKANGIKSAR  300
KITLVDRVER EFCEANGVKA GESFKLELIE EEEEDTAATH LLKFCTKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00111010001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584440.13e-94PREDICTED: B3 domain-containing protein REM10-like isoform X2
TrEMBLA0A0D3CLA30.0A0A0D3CLA3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F3380.0A0A3P6F338_BRAOL; Uncharacterized protein
STRINGBo5g136890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.13e-31B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]