PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00110953001

Common Name

GSBRNA2T00110953001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 339aa MW: 36383.2 Da PI: 7.1341

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00110953001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00110953001 148 YQCKTCDRTFPSFQALGGHRASH 170 9***********99999998887 PP
2	zf-C2H2	13.2	0.00026	201	223	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00110953001 201 HECGICGAEFTSGQALGGHMRRH 223 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.9E-12	147	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.41E-8	147	223	No hit	No description
PROSITE profile	PS50157	10.471	148	175	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	148	170	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.7E-4	199	225	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.1E-11	200	225	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	201	225	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	201	223	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	203	223	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
METAEEAISA AKEQALILKG KRTKRQRLQS PIPFSIVPPM SSQEPDVEDE STSLVSKEKS 60 LNDEINTNKN DNNMLSNGVT SPASSSSNNN ATLKTAADEE DQDMANCLIL LAQESGNNNN 120 NAYRSSSRRF LETSNGTTSG GRAGYYVYQC KTCDRTFPSF QALGGHRASH KKPKAAAGLH 180 SDHDLKKSLV VYGKANNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAS AASASTATVR 240 VAATAGTANT ALSLSPMSFD QMSVHPVQAP VKRARSAVVS LDLDLNLPAS EDVNRVNGLS 300 FASKQEQEQE HEHEQTHQRE EQKTLVLSSA PTLVDCHY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00110953001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011560	1e-119	AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBank	ATAC013428	1e-119	AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBank	CP002686	1e-119	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584958.1	0.0	PREDICTED: zinc finger protein ZAT5-like
Refseq	XP_013670327.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A078F683	0.0	A0A078F683_BRANA; BnaA05g28380D protein
STRING	Bo5g137370.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10470.1	1e-122	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]