PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110232001
Common NameGSBRNA2T00110232001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 409aa    MW: 44379.1 Da    PI: 6.6467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110232001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-0683104426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + Cr++   G C++Gd+C++ H+
  GSBRNA2T00110232001  83 KVCRYWVD-GSCSHGDKCRYLHC 104
                          68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-4833IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.009834IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.33379106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-679103IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-481105IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-482104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-583101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.7E-43102399IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.11E-43110403IPR017986WD40-repeat-containing domain
SMARTSM003202.1E-5110149IPR001680WD40 repeat
PfamPF004004.1E-4113149IPR001680WD40 repeat
PROSITE profilePS5029419.934117319IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.583117158IPR001680WD40 repeat
PROSITE patternPS006780136150IPR019775WD40 repeat, conserved site
PRINTSPR003201.2E-6136150IPR020472G-protein beta WD-40 repeat
SMARTSM003207.1189226IPR001680WD40 repeat
SMARTSM003200.033233270IPR001680WD40 repeat
PfamPF004000.056237270IPR001680WD40 repeat
PROSITE profilePS5008211.277240279IPR001680WD40 repeat
PRINTSPR003201.2E-6257271IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4273310IPR001680WD40 repeat
PfamPF004000.0042275309IPR001680WD40 repeat
PRINTSPR003201.2E-6297311IPR020472G-protein beta WD-40 repeat
SMARTSM0032026314357IPR001680WD40 repeat
SMARTSM003209.6360397IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDFDLNGGSK REVCSYWRAG RCNRNPCQFL HRELPGPGYS NKRVADEPGF AGPSHRRGPG  60
FNGNSSNNWG RFGGNRTVTK TEKVCRYWVD GSCSHGDKCR YLHCWSNGDS FSLLTQLDGH  120
EMLVTGIALP SGSDKLYTGS KDETIRLWDC ASGQCTSVLN LGAEVGCVIS EGPWLLVGMP  180
NLVKAWNIET NADQSLSGPI GQVYSLVVGT DLLFAGTQDG SILAWRYSAA TNCFEPAASL  240
TGHTLGVVTL YVGANRLYSG SMDKSIKVWS LDNLQCIQTL TDHTSVVMSL ICWDQFLLSC  300
SLDNTVKIWA AVEGGNLEVT YTHKEEHGVL ALCGVHDAEA KPVLLCSCND SALRLYDLPS  360
FTERGKIFAK QEIRSIQIGQ GGIFFTGDGT GQVKVWKWST APTTAAMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-191144038323Tako8
6g6n_A1e-191144038323Tako8
6g6n_B1e-191144038323Tako8
6g6n_C1e-191144038323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68670.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110232001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509750.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like, partial
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLM4EHM40.0M4EHM4_BRARP; Uncharacterized protein
STRINGBra028289.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]