PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00108894001
Common NameGSBRNA2T00108894001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26115.7 Da    PI: 5.0685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00108894001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.8e-122371650
                         HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
               SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                         R+++il KA ELS+LCd e++vi +   g+l ++++
  GSBRNA2T00108894001  2 RQETILRKAGELSTLCDNEICVIHYDRVGNLvRTWP 37
                         99***********************99987636776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.475132IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-8248IPR002100Transcription factor, MADS-box
PfamPF003193.1E-6232IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRQETILRKA GELSTLCDNE ICVIHYDRVG NLVRTWPEDE SQVQKMHDEK KRSPIEFSQK  60
VQELEGSLVS KLQLLRDMML REDHRIESST NLLRNGSTST EQDLSRGDVY NSTATGSFNH  120
QSKYSIFMFN HENATLSQLP HSISSSLEQS LIPSYYNNLN DHRALLGAQG FNDNNNLSTT  180
QGFFNFGYDN NALPGEQVNF GYYNSLLGTQ GFGGYDNNLN YTQGFNNLCT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00108894001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728700.0AC172870.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022564482.11e-159agamous-like MADS-box protein AGL53
TrEMBLA0A3P5YBQ71e-150A0A3P5YBQ7_BRACM; Uncharacterized protein
TrEMBLM4EGV51e-150M4EGV5_BRARP; Uncharacterized protein
STRINGBra028020.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2153425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.13e-30AGAMOUS-like 89
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]