PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107626001
Common NameGSBRNA2T00107626001, LOC106448694
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40718.6 Da    PI: 8.8215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107626001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.2e-222369551
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++
  GSBRNA2T00107626001 23 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSDGELKTWPK 69
                         578899***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-51470IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-1724102IPR002100Transcription factor, MADS-box
CDDcd002665.65E-172791No hitNo description
PROSITE profilePS5006611.8862771IPR002100Transcription factor, MADS-box
PfamPF003192.9E-132867IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSSSFLPS SSSLVRQNHF QKTSSLKATS LAKRQVTVFK KARELSILCG IEVCVIYYGS  60
DGELKTWPKD REKVKDMARR YSQLSDMKRR KGQDDLDKFL KKINKEDSKK KKVKVESSCK  120
YLDWDPRFDN CSVEQLTELI QSLEHSETKL QHRLRCAVES QRQRNMYYTT MAGQEQMNHL  180
QQHSDQVSMD QYNHGTGTLP QLPVSTSAFN QSQSLAPLPN SLTIHHNPNM ESYSRLLGVQ  240
ETGMNELLSM TMLPYNNINT NNVNVFPNQF HQNSYNMEDY SGFLGGINNV SSEDYSGLLW  300
TQGTGISGLQ NMDMFGYNNN NNNAYGFSNQ LVQYQGQRAP PGFQYMDRST QNIRPL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107626001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746001.10.0agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-101AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A3P6FE390.0A0A3P6FE39_BRAOL; Uncharacterized protein
STRINGBo5g117290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-90AGAMOUS-like 103
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]