PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00107454001 | ||||||||
Common Name | GSBRNA2T00107454001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 355aa MW: 38468.1 Da PI: 9.5676 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.9 | 9.4e-13 | 276 | 329 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ ++ GSBRNA2T00107454001 276 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEMQKN 329 69***************************************8666555555443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.4E-10 | 272 | 337 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 274 | 325 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.9E-13 | 276 | 331 | No hit | No description |
CDD | cd14707 | 1.13E-23 | 276 | 328 | No hit | No description |
Pfam | PF00170 | 1.9E-10 | 276 | 329 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.05E-9 | 276 | 325 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 279 | 294 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGTHINFNNL GGGDPGGEGF NQMKPTDTAY PLARQSSLYS RTFDELQSLL GGPGKDYGSM 60 NMDELLKSIW TAEEAQAMSM TMTSSAPTTM VEPGGNLQRQ GSLTLPRTIS QKTVDEVWKC 120 LITKDGGGCS GGGCGESNNA PQRQQTLGEM TLEEFLSRAG VVREDNNSSQ HMGQVTGNNN 180 NGFYGNNGAP GGLGFEFTIF PKQANVAFAV NKSFNGAVNN SMNNTNGLAC FGGAGVAVAA 240 TSPGTSSAEN NSLSPVPYVL NRGRRSNTGL EKVIERRQRR MIKNRESAAR SRARKQAYTL 300 ELEAEIEKLK KVNQELQRKQ AEMMEMQKNE LKESSKKPWG SKRQCLRRTL TGPW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00107454001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ971974 | 1e-178 | JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022555901.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Refseq | XP_022555902.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1 | ||||
Swissprot | Q9M7Q2 | 1e-163 | AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | A0A0D3CII2 | 0.0 | A0A0D3CII2_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g115300.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM734 | 27 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.1 | 1e-103 | abscisic acid responsive element-binding factor 1 |
Publications ? help Back to Top | |||
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