PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107287001
Common NameGSBRNA2T00107287001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 193aa    MW: 20752.3 Da    PI: 9.105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107287001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015109131123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  GSBRNA2T00107287001 109 HPCPICGVEFPIGQALGGHMRKH 131
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-75175No hitNo description
PfamPF139128.6E-105276IPR007087Zinc finger, C2H2
SMARTSM003550.625375IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6815380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-7104131No hitNo description
PROSITE profilePS5015710.034109136IPR007087Zinc finger, C2H2
SMARTSM003550.16109131IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-9109132IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVARSEKLDR TVEGTAGNNE KLERTVEDKA ANCLMLLSRI GENGGGGRES RVYRCKTCMK  60
EFSSFQSLGG HRASHNKHVN NSSSDEQSSL SSGSIAKPKR KTTNTTRSHP CPICGVEFPI  120
GQALGGHMRK HRNEEEASGA LVARPFFPEA ATSMITTLKK SSSGKRVACF DLGPDSVESS  180
INLNLELGSS MY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107287001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149989.11e-124PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX853e-69ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DNY71e-123M4DNY7_BRARP; Uncharacterized protein
STRINGBra018225.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.18e-69C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]