PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00107134001

Common Name

GSBRNA2T00107134001, LOC106446099

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 303aa MW: 33389.2 Da PI: 4.7853

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00107134001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.1	1.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v+ ++fdfl ++v + GSBRNA2T00107134001 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTVSSLHLKNCVETYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.2E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.08E-19	4	97	IPR009072	Histone-fold
Pfam	PF00808	2.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TVSSLHLKNC VETYNVFDFL REVVSKVPDY GHGHGHGHGL GNGQADATMD DRTISKRRKP 120 TGDEANDSDE EIKKTKVHET GQVGPSGRGR GRGRGRGRGR SAKTAEKELL QRGMETEPTI 180 LSAPPQLITH DGITMLPSQP QQDTEKEVDD MSKQELQSPK AGNDDTNSGL GRDFDLNTQT 240 LEVETKPPVV VVTASTETTK PEEYPGWSIS DIGNMDPMQL ASMGKRLDEE EEEEEDYDEV 300 DA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	158	RGRGRGRGRG
2	149	159	RGRGRGRGRGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16773	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00107134001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC818622	0.0	KC818622.1 Brassica napus transcription factor subunit NF-YC11A (NF-YC11A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013743234.1	0.0	dr1-associated corepressor homolog
TrEMBL	A0A0A7AM29	0.0	A0A0A7AM29_BRANA; Transcription factor subunit NF-YC11A
STRING	Bo9g175110.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-96	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Entrez Gene	106446099

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]