PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00107078001
Common NameGSBRNA2T00107078001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 452aa    MW: 50177.5 Da    PI: 7.2532
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00107078001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10151179533
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                          k  rr+++NReAAr+sR+RKka++++Le 
  GSBRNA2T00107078001 151 KTLRRLAQNREAARKSRLRKKAYVQQLES 179
                          7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-9143195No hitNo description
SMARTSM003382.3E-6147236IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.737149193IPR004827Basic-leucine zipper domain
PfamPF001709.4E-8151181IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-7151192No hitNo description
CDDcd147083.16E-22151203No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
PfamPF141441.7E-30245319IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MQGHHQNHHQ QLSSASATSS SGNFMNKDGY DLGEIDPSLF LYLDGQGHHD QPSTAPLPHH  60
HTTQNLAMRP PTSTLNIFPS KPMHIEPPPS SSTPNAVAPS GSTRPSSEPS MDLTNHSQFQ  120
LPQPSKSIKK EGNRKGLASS DHDTPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC  180
RIKLTQLEQE IQRARSQGVF YGGSLMGGDQ QQGGMPIGPG YTSSAEAAVF DMEYTRWLEE  240
QQRLLTELRV ATQEHLAENE LRMFVDTCLA HYDHLINLKA MVAKTDVFHL ISGAWKTPAE  300
RCFLWMGGFR PSEIIKVIVN QIEPLTEQQI VGICGLQQST HEAEEALSQG LEALNQSLSD  360
SIVSDSLSPA SAQLPPHLSN FMSHMSLALN KLSSLEGFVL QADNLRHQTI HRLNQLLTTR  420
QEARCILAVA EYFHRLQALS SLWLARPRQE G*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in inflorescence apex and flowers. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00107078001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1327420.0HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715693.10.0transcription factor TGA10 isoform X1
RefseqXP_013715694.10.0transcription factor TGA10 isoform X2
RefseqXP_022549419.10.0transcription factor TGA10 isoform X3
SwissprotE3VNM40.0TGA10_ARATH; Transcription factor TGA10
TrEMBLA0A3P6CP700.0A0A3P6CP70_BRACM; Uncharacterized protein
STRINGBo9g175780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]