PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00106006001
Common NameGSBRNA2T00106006001, LOC106405117
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 244aa    MW: 26942.6 Da    PI: 5.0313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00106006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1966115255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  GSBRNA2T00106006001  66 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 115
                          69****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.53866123IPR001471AP2/ERF domain
PfamPF008475.3E-1366115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3166124IPR001471AP2/ERF domain
SMARTSM003801.6E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2166123IPR016177DNA-binding domain
PRINTSPR003671.2E-106778IPR001471AP2/ERF domain
CDDcd000181.41E-3167125No hitNo description
PRINTSPR003671.2E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEKQINVESS ATHHQEDNNA SAITTSTVAA VNSSESWSSK RYLVQDTEAG GKRRKRNGGN  60
GNKNPTYRGV RKRSWGKWVS EIREPKKKSR IWLGTYPTAE MAARAHDVAA LAIKGNSGYL  120
NFPELSGLLP RPVSCSPKDI QAAAAKAAEV MWQEPVIDEK LANERSHSEL STAQSSTSSS  180
FVFSSDTIDS LSTDKESNEE TVFDLPDLFM EGFLNHDDSF GYYESTTTWQ LYGEDVGFAW  240
LDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1659123772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.156220.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00106006001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701170.10.0ethylene-responsive transcription factor ERF035
SwissprotQ9M2103e-96ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A3P6FVP61e-180A0A3P6FVP6_BRAOL; Uncharacterized protein
STRINGBo6g077080.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.13e-79ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]