PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00105790001

Common Name

GSBRNA2T00105790001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 299aa MW: 33516.1 Da PI: 7.0179

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00105790001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	173	216	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + GSBRNA2T00105790001 173 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 216 899********************************998777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-13	169	233	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	171	223	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-13	173	224	No hit	No description
Pfam	PF00170	2.6E-9	173	217	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.09E-11	173	227	No hit	No description
CDD	cd14703	3.75E-24	174	224	No hit	No description
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAQLPPKIPT MTTTTPHWPD FSSQKLPSIA ATAAATAGQQ NPSWMDEFLD FSTTRRGTHR 60 RSISDSIAFL ETPSSGVGSH HFDRFDDEQF MSMFNDDVHQ NHNNQHNNNV GPTHPLSADH 120 NRMDTTPIPS NVAGNDNNET DEVQSQCKTE PQDGPSLNQD SGGSSGNRIH DPKRVKRILA 180 NRQSAQRSRV RKLQYISELE RSVTSLQTEV SVLSPRVAFL DHQRLLLNVD NSAIKQRIAA 240 LAQDKIFKDA HQEALKREIE RLRQVYHQQS LKKMENNVSD QSPADIKPSV EKEQLLNA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00105790001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF401300	0.0	AF401300.1 Arabidopsis thaliana transcription factor bZIP61 (BZIP61) mRNA, complete cds.
GenBank	AY087356	0.0	AY087356.1 Arabidopsis thaliana clone 34553 mRNA, complete sequence.
GenBank	AY093053	0.0	AY093053.1 Arabidopsis thaliana pelota-like protein (At3g58120) mRNA, complete cds.
GenBank	BT008728	0.0	BT008728.1 Arabidopsis thaliana At3g58120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588300.1	0.0	PREDICTED: basic leucine zipper 61-like isoform X1
Swissprot	Q9M2K4	1e-167	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A0D3CUI3	0.0	A0A0D3CUI3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G8J7	0.0	A0A3P6G8J7_BRAOL; Uncharacterized protein
STRING	Bo6g074510.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-149	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]