PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00105168001 | ||||||||
Common Name | GSBRNA2T00105168001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 26229.5 Da PI: 8.723 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.5e-31 | 140 | 198 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ GSBRNA2T00105168001 140 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 198 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-34 | 124 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 132 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.597 | 134 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 139 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MFSNLFYATE GNAEGGKRQE VQTMVPRQFM DLGPSSGAAE QDAEVSSEER TMLRSGSPPL 60 LLENSNPRES GKRLLAREES PESESNAWGN PNKVSKHNPP SGGNNNNNGN RNLIDQSAAE 120 ATMRKARVSV RARSEATMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAGG CPVRKQVQRC 180 AEDRSILITT YEGNHNHPLP PAAMAMASTT TAAASMLLSG SVSSQDNLMN PTIILFILYG 240 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-24 | 126 | 202 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25602 | 2e-78 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00105168001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246577 | 0.0 | KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022571769.1 | 1e-164 | probable WRKY transcription factor 31 | ||||
Refseq | XP_022571773.1 | 1e-164 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9XEC3 | 1e-115 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A398ARY6 | 1e-164 | A0A398ARY6_BRACM; Uncharacterized protein | ||||
STRING | Bra013584.1-P | 1e-163 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 1e-103 | WRKY DNA-binding protein 31 |
Publications ? help Back to Top | |||
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