PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00104206001
Common NameGSBRNA2T00104206001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 643aa    MW: 70484.4 Da    PI: 8.0314
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00104206001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07265285526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f + G Ck Gd C +aHg
  GSBRNA2T00104206001 265 PCPDFKK-GSCKQGDACEYAHG 285
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-1614143IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1815160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.165989IPR002110Ankyrin repeat
PfamPF127961.0E-959127IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.70659166IPR020683Ankyrin repeat-containing domain
CDDcd002045.45E-1461143No hitNo description
PROSITE profilePS5008811.62194129IPR002110Ankyrin repeat
SMARTSM002488.5E-594126IPR002110Ankyrin repeat
SMARTSM002483300130163IPR002110Ankyrin repeat
SMARTSM003561.5E-4260286IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5265285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028265287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4265287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4293323IPR000571Zinc finger, CCCH-type
SMARTSM0035658295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MCGLSKNNSE LEHSFSALLE FAADNNVEGF KHQLSLVPCI NQMGLWYRRQ RFVRRMVVEQ  60
RTPLMVASIY GSVDVVKLIL SFPEAELNLA SGSDKSTALH CAASGASANS LGVVKLLLSA  120
GADPNILDAH GNRPVDVLVA SPHAPGLRTV LEEILKKDED PSSSLGSSLR SLSSSPENGS  180
SLQSLGSVSS PTKVDASEKK EYPLDPSLPD IKSGIYSTDE FRMFSFKIRP CSRAYSHDWT  240
ECPFAHPGEN ARRRDPRKFH YTCVPCPDFK KGSCKQGDAC EYAHGVFECW LHPAQYRTRL  300
CKDGTSCNRR VCFFAHLKEE LRPLYASTGS GLPSPSSAAA TMDMASVLNM LPGSPSAAPI  360
SPSATMGWPQ QNNIPALHLP GSNVQLSRLR SSLNARDIIP SEQLSMMQEF EMQRMSSPRF  420
MNHHSARPKT LLTPSNLEEL FSAEVASSPR FSDQLGVSSV LSPSHKSALL NQLQSNKQQS  480
MLSPIKTNIM SSPKNVEHHS PRAMEPISPM NSRMKQQLHP RSLSSRDFGS SMMPTDSGSP  540
LSPWSSWDQN HGNKVDWSVQ SDELGRLRKS HSLANNNNSN READVTWVQQ LVKDSAASPR  600
NNNGAMNMNG SRPLVHGGSS VNPPHSESDI LDAWLEQLQL DR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00104206001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667987.10.0zinc finger CCCH domain-containing protein 56-like
RefseqXP_013667988.10.0zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3P6D9R20.0A0A3P6D9R2_BRACM; Uncharacterized protein
TrEMBLM4CXD00.0M4CXD0_BRARP; Uncharacterized protein
STRINGBra008877.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]