PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103989001
Common NameGSBRNA2T00103989001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 299aa    MW: 33405.5 Da    PI: 4.843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103989001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-05144181654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+r+N++++ Lr+++              +iL  A+eY+k+L
  GSBRNA2T00103989001 144 LMAERRRRKRLNDRLSMLRSIMDRT-----------SILGDAIEYMKEL 181
                          589*****************99776...........6777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.708138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-5144187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDMEWTQISK QESNNHDFFP SGRNLEYLCF NNPLHEDDNN VDHTFSSLMD LISQPPPLLH  60
QPPQPSSSPT PFFSSTFDYP LLETLQDVIE SPYYPPLGIS ASQEGNNNDN SSPLVEESKS  120
LMSTGETNKK KRNKKVVGQP SKNLMAERRR RKRLNDRLSM LRSIMDRTSI LGDAIEYMKE  180
LLNKINKLQE LGSNSDLKDS LTTNQSMVRN SPKFEVDQRE VNTHIDICCS TQPGLLLSTV  240
GTLEINLGLE IQQCVISCFS DFSLQATCSE VAGNSECITS EDIKQALIKN AGYGGRCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127134NKKKRNKK
2129151KKRNKKVVGQPSKNLMAERRRRK
3146153ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103989001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731647.11e-180transcription factor bHLH61-like
SwissprotQ9LXA91e-114BH061_ARATH; Transcription factor bHLH61
TrEMBLM4CXS51e-178M4CXS5_BRARP; Uncharacterized protein
STRINGBra009022.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-111bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]