PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102915001

Common Name

GSBRNA2T00102915001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 238aa MW: 27828.2 Da PI: 8.8745

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102915001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	77.7	1.3e-24	116	165	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e++s y+++pi++AAkeL+++lT+LK++CR +GI+RWPhRki sl GSBRNA2T00102915001 116 KPLSKETISLYYDMPIAQAAKELNIGLTLLKKKCRDLGIQRWPHRKIMSL 165 67999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	96	185	IPR003035	RWP-RK domain
Pfam	PF02042	7.2E-20	118	165	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKLCLIFFNS ILLFLLFGLM FEFTNNFFEL QDEIICSGNY DYYLPSASSF LALPDLEPIS 60 IVSHEDLLND YGAVSWTEKE SMFDEHQRED FNLVKKTETV KKRVREECSS SSYVAKPLSK 120 ETISLYYDMP IAQAAKELNI GLTLLKKKCR DLGIQRWPHR KIMSLDNLIE NVKEKLEKGE 180 GNADEQRKKL EKLKKEKKRM KESPDLEYED KTKRLRQACY KANHKRKRRL VMSTSTT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	198	KKLEKLKKEKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102915001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	2e-52	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	2e-52	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601512.1	1e-138	PREDICTED: protein RKD1
Swissprot	Q9M9U9	2e-84	RKD1_ARATH; Protein RKD1
TrEMBL	A0A0D3DQ95	1e-140	A0A0D3DQ95_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FTF0	1e-140	A0A3P6FTF0_BRAOL; Uncharacterized protein
STRING	Bo8g068090.1	1e-140	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-73	RWP-RK domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]