PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102906001
Common NameGSBRNA2T00102906001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 518aa    MW: 57736.9 Da    PI: 6.3578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102906001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66e-29232291159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+H h+
  GSBRNA2T00102906001 232 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCSEDLSILISTYEGTHSHP 291
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30217293IPR003657WRKY domain
SuperFamilySSF1182902.62E-26225293IPR003657WRKY domain
PROSITE profilePS5081127.692227293IPR003657WRKY domain
SMARTSM007747.4E-34232292IPR003657WRKY domain
PfamPF031061.5E-25233291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MEKEEFLGSG HGREERNEEM RKLDSDQEHD HIIRSKLDSI KVEMEEAKEE NRRLKSSLSR  60
TKKEFEILQT QYNQLMVIIH EDPNKFSPKG YNQHKEEDEE DKERTSDRED LVLLSLGRRL  120
KSPVPSGSMT NKEEKMKDFM KETDDDKRIN EQGLSMGFEY KDLSNPSEKL EVDHNQEKTS  180
LEVSNSNKIQ SENSFGFKND GDEHEDKEEP LPQNIAKKTR VSVRARCETP TMNDGCQWRK  240
YGQKIAKGNP CPRAYYRCTI APSCPVRKQV QRCSEDLSIL ISTYEGTHSH PLPMSATAMA  300
SATSAAASML LSGASSSSSA ADLHGINFSI SSNSITPKPL LQTSSGHPTV TLDLTTTSSS  360
QQPFLSMLNR FSVPPSNVPR SNSYPSTNLS FSNNTNTLMN WGGGSNRNEQ YRAPYGNIST  420
HQQSPFQHMI QTRAAGLSFD TFGRSSSSSP HPTQNSLDNV NFKNITHDQV QSLPAETIKA  480
ITTDPNFQSA LATALSSIIG GDLKIDNVTR SEAEKSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20219293174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102906001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300680.0KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110313.10.0PREDICTED: probable WRKY transcription factor 61
SwissprotQ8VWV60.0WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A397YE740.0A0A397YE74_BRACM; Uncharacterized protein
STRINGBra016535.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.10.0WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]