PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102798001

Common Name

GSBRNA2T00102798001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 303aa MW: 34440.8 Da PI: 8.0221

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102798001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.9	4.8e-27	80	174	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li+a+++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ + GSBRNA2T00102798001 80 KWTDKMVKLLITAVSYIGDDSSMDGggrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPK 169 7************8888888643344556677********************************************6699999998 PP trihelix 81 yfdql 85 ++d++ GSBRNA2T00102798001 170 LLDSI 174 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.8E-24	78	166	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDGKLPQGVA VRGGAASYGG FDLQGPMSQH LQGLPFTMVS GQTCGHHLSE QHKGERESDD 60 DEQPSFNEEA TKGSPWQRVK WTDKMVKLLI TAVSYIGDDS SMDGGGRRKF AALQKKGKWK 120 SVSKVMSERG YHVSPQQCED KFNDLNKRYK KLNDMLGRGT SCQVVENPKL LDSIGYLNDK 180 EKDDKARESH SHSHEGVDHQ GHVNSLECNK VTLALPQVGA ESGRSASVQK QWIESRTLQL 240 EEQKLQIQVE LLELEKQRFR WERFSKKRDQ ELERMRMENE RMKLENDRMG LELKQRVLGV 300 EL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.5360	1e-124	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102798001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY045850	7e-87	AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	AY091378	7e-87	AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBank	CP002684	7e-87	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F16F4	7e-87	AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009110193.1	1e-132	PREDICTED: uncharacterized protein LOC103835755
Refseq	XP_013708471.1	1e-132	uncharacterized protein LOC106412126
Refseq	XP_013708472.1	1e-132	uncharacterized protein LOC106412126
Refseq	XP_013722062.1	1e-132	uncharacterized protein LOC106425887
Refseq	XP_013722063.1	1e-132	uncharacterized protein LOC106425887
Refseq	XP_018509348.1	1e-132	PREDICTED: uncharacterized protein LOC103835755
TrEMBL	A0A397YIF8	1e-132	A0A397YIF8_BRACM; Uncharacterized protein
STRING	Bra016429.1-P	1e-132	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-96	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]