PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102733001
Common NameGSBRNA2T00102733001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 279aa    MW: 31363.3 Da    PI: 5.9842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102733001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd+ lv ++k++G g+W+t +++ g+ R++k+c++rw++yl
  GSBRNA2T00102733001 14 KGEWTAEEDQMLVAYIKEHGLGDWRTLPKRAGLQRCGKSCRLRWLNYL 61
                         799*******************************************97 PP
2Myb_DNA-binding56.94.8e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++E+e +++ + +lG++ W++Ia+ m+ +Rt++++k++w++ 
  GSBRNA2T00102733001  67 RGKFTPQEEEDIIKFHSLLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                          89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.186961IPR017930Myb domain
SuperFamilySSF466891.5E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-241568IPR009057Homeodomain-like
CDDcd001671.86E-111661No hitNo description
PROSITE profilePS5129425.99462116IPR017930Myb domain
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1667111IPR001005SANT/Myb domain
CDDcd001671.60E-1069109No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2569117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRTTWFDDD GIKKGEWTAE EDQMLVAYIK EHGLGDWRTL PKRAGLQRCG KSCRLRWLNY  60
LKPGIKRGKF TPQEEEDIIK FHSLLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRSG  120
IDPMTHKPTV NVAKATSSST TSSPTPTPSS SSSTSSSFSS TGSARLLNKL AAGISSRKHE  180
LDRIKNVIMS KPRQAVEEDE MMIGSKEDEE VTGCSMEIDE NLISMTSFDE FLTCDFTPTY  240
TTGFVDAFGG YSLVEPYDLY QSDFYHETSD DQLDLFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28141167108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.11510.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102733001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382850.0KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701061.10.0transcription factor MYB41-like
RefseqXP_013702433.10.0transcription factor MYB41-like
TrEMBLA0A397YVA00.0A0A397YVA0_BRACM; Uncharacterized protein
STRINGBra015911.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-117myb domain protein 95
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]