PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102220001
Common NameGSBRNA2T00102220001, LOC106385253
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 349aa    MW: 38417.4 Da    PI: 5.843
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31175233259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  GSBRNA2T00102220001 175 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 233
                          79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-31161235IPR003657WRKY domain
SuperFamilySSF1182904.32E-27167235IPR003657WRKY domain
PROSITE profilePS5081133.281169235IPR003657WRKY domain
SMARTSM007746.1E-39174234IPR003657WRKY domain
PfamPF031063.0E-26176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSEDWDLFAV VRSCSSSVSA ATINTNSRGG AEGGANCKQQ DRPPLFQHIH GDISRESSSC  60
NELQDSCKPF LPVTTTWSSP LPPPPPPPPP VVSSAPNILM KQEQGLIESQ DQKPPLGARV  120
FPPPTTISSS SSVFVFRGQR DHLLQQQPQA PLRSRKRKNQ QKRTICHVTQ ENLSSDMWAW  180
RKYGQKPIKG SPYPRNYYRC SSSKGCLARK QVERSNLDPN IFIVTYTGEH THPRPTHRNS  240
LAGSTRNKSQ PVNPPPKPDH PSGQTVSGVK EEIHLSPTTP LKENDDVQGT NGEEVVNMED  300
EELDEEEDDD DDVDDLLIPN FSVRDRDDLF FAGNFPSWSA GSAGDGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-201762361880Disease resistance protein RRS1
5w3x_D7e-201762361880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102220001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465730.0KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680634.10.0probable WRKY transcription factor 27
SwissprotQ9FLX81e-133WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A3P6CTA00.0A0A3P6CTA0_BRAOL; Uncharacterized protein (Fragment)
STRINGBo2g047450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-116WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]