PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00101881001 | ||||||||
Common Name | GSBRNA2T00101881001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 296aa MW: 34453.9 Da PI: 10.1804 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.7 | 1.2e-19 | 16 | 108 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk++ ++d +++++ lp +f+ ++ +k+ s +++++ e+g sWev + +k+++ y+ ++GW++Fv++n L +++f++F+ +g+++ GSBRNA2T00101881001 16 FFKIFQSADLSSECMRALPYNFM-QNLSKEDFSYKMVIRAERGSSWEVDI--SKNPRFyYMEKSGWNQFVSDNALGDNEFITFTQKGSMS 102 99*********************.66567789******************..******566669********************888888 PP E..EEEEE CS B3 90 felvvkvf 97 f +v ++ GSBRNA2T00101881001 103 F--NVNIY 108 8..66665 PP | |||||||
2 | B3 | 38.1 | 2.8e-12 | 206 | 285 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ + lp+ f eeh + es++ t+ + e sW+v + + +r+v+++GW++ +++ Lk+gD ++Fkl++ +ef l k GSBRNA2T00101881001 206 LKFMLLPRVFEEEHI--PGESMEYTIHHsEMRCSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFKLIKPTEFVLITK 285 456899999999993..5578899999845559******..888888**************************99888855544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-18 | 10 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-19 | 11 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.42E-16 | 15 | 108 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 16 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-23 | 16 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-18 | 16 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-14 | 192 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 192 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.8 | 194 | 288 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.57E-10 | 195 | 278 | No hit | No description |
SMART | SM01019 | 7.8E-12 | 197 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-11 | 205 | 286 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MSWNGRIKEE RKNLSFFKIF QSADLSSECM RALPYNFMQN LSKEDFSYKM VIRAERGSSW 60 EVDISKNPRF YYMEKSGWNQ FVSDNALGDN EFITFTQKGS MSFNVNIYGK NGKEIVAPRK 120 PPTTTPLSGV KKEEGERSYK DVKKEEETCE SMEGVELEEA TKKKKKSKKV LSYKAEKLKT 180 LKKKKKIKTV KKGVPEFEIT IRKSYLKFML LPRVFEEEHI PGESMEYTIH HSEMRCSWNV 240 LCLVRENRTV FSSGWSRLAR EFPLKVGDRC TFKLIKPTEF VLITKKSRKE TTVIG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 163 | 185 | KKKSKKVLSYKAEKLKTLKKKKK |
2 | 181 | 191 | KKKKKIKTVKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00101881001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189348 | 1e-137 | AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585073.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 1e-112 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | A0A3N6PV11 | 0.0 | A0A3N6PV11_BRACR; Uncharacterized protein | ||||
STRING | Bo5g123540.1 | 1e-152 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G17010.1 | 1e-110 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|