PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100979001
Common NameGSBRNA2T00100979001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 269aa    MW: 31167.3 Da    PI: 6.1876
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100979001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32301212102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k++ei+ed+++++++sw++ g sfvv+d ++f++ +Lp++Fkhsnf+SF+RQL++YgF+k+++++         weF+++ F  g++
  GSBRNA2T00100979001  30 FLIKTFEIVEDPNTDHIVSWNRGGASFVVWDLHSFSTFLLPRHFKHSNFSSFIRQLKTYGFRKIESDR---------WEFANDGFLLGQR 110
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr++s
  GSBRNA2T00100979001 111 QLLKSIKRRAS 121
                          ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-3226119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5226119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3426119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-173053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-2830119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-178193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNPFQLQEGD PPPSPPKPVE GLHEVGPPPF LIKTFEIVED PNTDHIVSWN RGGASFVVWD  60
LHSFSTFLLP RHFKHSNFSS FIRQLKTYGF RKIESDRWEF ANDGFLLGQR QLLKSIKRRA  120
SFGSSPSTHD PCTELRREKQ LLMMELVCLR QQQQTTRSYI KAMEQRIEGA ERKQRQMMSF  180
LARAMRSPSF LHQLLKQRDM RLKELEDEAA ERERGSSMSE LEALALEMQG YGKERNVKEE  240
EDMVVERELD DGFWEELLSN ESLASTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222812118122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100979001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631217.10.0PREDICTED: heat stress transcription factor A-7a
SwissprotQ9SV121e-149HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A3P6C8E40.0A0A3P6C8E4_BRAOL; Uncharacterized protein
STRINGBo4g125760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-151heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]