PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100147001

Common Name

GSBRNA2T00100147001, LOC106410189

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BES1

Protein Properties

Length: 306aa MW: 33166.1 Da PI: 9.5921

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100147001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	211	3e-65	11	148	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 +sgr+ptwkErEnnkrRERrRRai+akiy+GLR qGnyklpk++DnneVlkALc eAGw+vedDGttyrkgskp+ ++++ g++++ + GSBRNA2T00100147001 11 SSGRTPTWKERENNKRRERRRRAITAKIYSGLRGQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGSKPP-ASDMLGTFST---N 96 89***********************************************************************.8888888765...5 PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 ss+q s++ssa++sp++sy+ sp sssfpsps++d ++++ llp+l++ ++ GSBRNA2T00100147001 97 SSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 148 67777889***************************987..899999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.6E-60	11	132	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAAGGGGGGS SSGRTPTWKE RENNKRRERR RRAITAKIYS GLRGQGNYKL PKHCDNNEVL 60 KALCLEAGWI VEDDGTTYRK GSKPPASDML GTFSTNSSIQ PSPQSSAFPS PAPSYHGSPV 120 SSSFPSPSRY DGNPSSYLLL PFLHNIASSI PANLPPLRIS NSAPVTPPLS SPTSRGSKRK 180 LMTQQLPRHP LLFAISAPSS PTRRAGHQTP PTIPECDESE ESSFEDSGRW INFQSTAPSS 240 PTFNLVKQTS MVIDMKRSDW GMSGMNIKGS EFEFENGTVK AWEGEMIHEV AVEDLELTLG 300 VTKTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	8e-26	14	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	8e-26	14	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	8e-26	14	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	8e-26	14	94	372	452	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9876	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100147001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593116.1	0.0	PREDICTED: BES1/BZR1 homolog protein 2-like
Refseq	XP_013706127.1	0.0	BES1/BZR1 homolog protein 2
Swissprot	Q94A43	1e-165	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	A0A0D3DI18	0.0	A0A0D3DI18_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E9V4	0.0	A0A3P6E9V4_BRAOL; Uncharacterized protein
STRING	Bo7g118160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11512	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	8e-79	BES1/BZR1 homolog 2

Link Out ? help Back to Top
Entrez Gene	106410189

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]